regex-report

Generated using the Bioregistry v0.2.7-dev and PyOBO v0.5.1-dev-da7f208f on 2021-07-27T20:19:33.676649 using code on GitHub.

Prefix Name Version Pattern Invalid Total Percent
fbbi Biological Imaging Methods Ontology 2020-11-06 ^\d+$ 1 1 100.0%
ro Relation Ontology 2021-06-23 ^RO_\d{7}$ 5 5 100.0%
pdumdv Platynereis Developmental Stages 2020-03-10 ^\d{7}$ 21 21 100.0%
olatdv Medaka Developmental Stages 2020-03-10 ^\d{7}$ 47 47 100.0%
mmusdv Mouse Developmental Stages 2020-03-10 ^\d{7}$ 134 134 100.0%
exo Exposure ontology 2020-03-10 ^\d{7}$ 149 149 100.0%
hsapdv Human Developmental Stages 2020-03-10 ^\d{7}$ 238 238 100.0%
wbls C. elegans development ontology 2021-07-06 ^\d{7}$ 774 774 100.0%
fbcv FlyBase Controlled Vocabulary 2021-07-15 ^\d{7}$ 1094 1094 100.0%
wbphenotype C. elegans phenotype 2021-07-06 ^\d{7}$ 2610 2610 100.0%
gwascentral.phenotype GWAS Central Phenotype ^HGVPM\d+$ 4320 4320 100.0%
pathbank PathBank ^SMP\d+$ 110242 110242 100.0%
ncbitaxon NCBI organismal classification 2021-06-10 ^\d+$ 2308106 2308106 100.0%
gno Glycan Naming and Subsumption Ontology (GNOme) 1.7.2 ^\d{8}$ 90221 103921 86.82%
pr PRotein Ontology (PRO) ^PR:P?\d+$ 149587 224963 66.49%
idomal Malaria Ontology 2015-03-16 ^\d{7}$ 41 1457 2.81%
aeo Anatomical Entity Ontology 2014-12-05 ^\d{7}$ 1 133 0.75%
eccode Enzyme Nomenclature ^\d{1,2}(\.\d{0,3}){0,3}$ 51 6982 0.73%
eco Evidence ontology 2021-07-02 ECO:\d{7}$ 2 1788 0.11%
obi Ontology for Biomedical Investigations 2021-04-06 ^\d{7}$ 1 2927 0.03%
apo Yeast phenotypes 2020-03-10 ^\d{7}$ 0 309 0.0%
bfo Basic Formal Ontology 2019-08-26 ^\d{7}$ 0 35 0.0%
bspo Biological Spatial Ontology 2020-05-11 ^\d{7}$ 0 139 0.0%
bto BRENDA tissue / enzyme source 2021-04-27 ^BTO:\d{7}$ 0 6464 0.0%
cellosaurus Cellosaurus ID ^CVCL_[A-Z0-9]{4}$ 0 128806 0.0%
ceph Cephalopod Ontology 2016-01-12 ^\d{7}$ 0 321 0.0%
chebi Chemical Entities of Biological Interest ^CHEBI:\d+$ 0 18 0.0%
cio Confidence Information Ontology 2015-03-10 ^\d{7}$ 0 44 0.0%
cl Cell Ontology 2021-06-29 ^CL:\d{7}$ 0 2311 0.0%
cmo Clinical measurement ontology 2019-02-19 ^\d{7}$ 0 3629 0.0%
conso Curation of Neurodegeneration Supporting Ontology ^CONSO\d{5}$ 0 368 0.0%
cro Contributor Role Ontology 2019-12-11 ^\d{7}$ 0 81 0.0%
cteno Ctenophore Ontology 2016-10-19 ^\d{7}$ 0 151 0.0%
ddanat Dictyostelium discoideum anatomy 2020-04-13 ^\d{7}$ 0 131 0.0%
ddpheno Dictyostelium discoideum phenotype ontology 2020-06-19 ^\d{7}$ 0 982 0.0%
depmap DepMap Cell Lines ^ACH-\d+$ 0 1814 0.0%
doid Human Disease Ontology 2021-06-08 ^DOID:\d+$ 0 10727 0.0%
drugbank DrugBank ^DB\d{5}$ 0 14315 0.0%
drugbank.salt DrugBank Salts ^DBSALT\d{6}$ 0 2505 0.0%
ecocore An ontology of core ecological entities 2021-02-17 ^\d+$ 0 177 0.0%
efo Experimental Factor Ontology 3.32.0 ^\d{7}$ 0 9875 0.0%
emapa Mouse Developmental Anatomy Ontology 2020-02-12 ^\d+$ 0 7845 0.0%
fao Fungal gross anatomy 2020-05-07 ^\d{7}$ 0 112 0.0%
fix Physico-chemical methods and properties 2020-04-13 ^\d{7}$ 0 1163 0.0%
fma Foundational Model of Anatomy 2020-04-13 ^FMA:\d+$ 0 78977 0.0%
fplx FamPlex ^[a-zA-Z0-9][A-Za-z0-9_]+$ 0 721 0.0%
fypo Fission Yeast Phenotype Ontology 2021-07-21 ^\d{7}$ 0 7391 0.0%
geno Genotype Ontology 2020-03-08 ^\d{7}$ 0 218 0.0%
go Gene Ontology 2021-07-02 ^GO:\d{7}$ 0 44085 0.0%
gsso Gender, Sex, and Sexual Orientation (GSSO) ontology ^GSSO:\d{6}$ 0 8654 0.0%
gwascentral.study GWAS Central Study ^HGVST\d+$ 0 4320 0.0%
hgnc HUGO Gene Nomenclature Committee ^((HGNC|hgnc):)?\d{1,5}$ 0 42514 0.0%
hgnc.genefamily HGNC Family ^[A-Z0-9-]+(#[A-Z0-9-]+)?$ 0 1569 0.0%
hp Human Phenotype Ontology 2021-06-13 ^HP:\d{7}$ 0 15816 0.0%
ido Infectious Disease Ontology 2017-11-03 ^[0-9]+$ 0 253 0.0%
itis Integrated Taxonomic Information System ^\d+$ 0 856953 0.0%
mesh Medical Subject Headings ^(C|D)\d{6,9}$ 0 300093 0.0%
mgi Mouse Genome Informatics ^MGI:\d+$ 0 304226 0.0%
mi Molecular Interactions Controlled Vocabulary 2020-04-13 ^MI:\d{4}$ 0 1435 0.0%
mirbase miRBase pre-miRNA ID MI\d{7} 0 38589 0.0%
mirbase.mature miRBase mature miRNA ID MIMAT\d{7} 0 49168 0.0%
miro Mosquito insecticide resistance 2014-05-14 ^\d{8}$ 0 4340 0.0%
mmo Measurement method ontology 2019-03-27 ^\d{7}$ 0 743 0.0%
mod Protein modification 2020-04-14 ^MOD:\d{5} 0 1978 0.0%
mondo Monarch Disease Ontology 2021-07-12 ^\d{7}$ 0 22294 0.0%
mop Molecular Process Ontology 2014-09-03 ^\d{7}$ 0 3579 0.0%
mp Mammalian Phenotype Ontology 2019-11-11 ^MP:\d{7}$ 0 13310 0.0%
mpath Mouse pathology ontology 2020-05-19 ^\d+$ 0 841 0.0%
ms Mass spectrometry ontology 2019-11-21 ^MS:\d{7}$ 0 2742 0.0%
nbo Neuro Behavior Ontology 2021-02-15 ^\d{7}$ 0 928 0.0%
ncit NCI Thesaurus 21.05d ^C\d+$ 0 158568 0.0%
nmr NMR-instrument specific component of metabolomics investigations 1.1.0 ^NMR:\d+$ 0 113 0.0%
omit Ontology for MicroRNA Target 2019-06-07 ^\d{7}$ 0 89 0.0%
omp Ontology of Microbial Phenotypes 2021-07-02 ^\d{7}$ 0 1997 0.0%
pco Population and Community Ontology 2021-05-03 ^\d{7}$ 0 65 0.0%
peco Plant Environment Ontology 2020-08-21 ^(P)?EO\:\d{7}$ 0 550 0.0%
pfam Pfam ID ^PF\d{5}$ 0 19179 0.0%
phipo Pathogen Host Interaction Phenotype Ontology 2021-07-14 ^\d{7}$ 0 932 0.0%
pid.pathway NCI Pathway Interaction Database: Pathway ^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$ 0 211 0.0%
planp Planarian Phenotype Ontology 2020-03-28 ^\d+$ 0 673 0.0%
poro Porifera Ontology 2016-09-13 ^\d{7}$ 0 607 0.0%
pride PRIDE Controlled Vocabulary ^\d+$ 0 607 0.0%
pw Pathway ontology 2019-10-23 ^PW:\d{7}$ 0 2600 0.0%
reactome Reactome ID (^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$)|(^REACT_\d+(\.\d+)?$) 0 21195 0.0%
rgd Rat Genome Database ID ^\d{4,}$ 0 65147 0.0%
rhea Rhea, the Annotated Reactions Database ^\d{5}$ 0 13651 0.0%
rs Rat Strain Ontology 2019-12-13 ^\d{7}$ 0 4835 0.0%
rxno Name Reaction Ontology 2021-01-21 ^\d{7}$ 0 614 0.0%
sbo Systems Biology Ontology 2021-04-21 ^SBO:\d{7}$ 0 651 0.0%
sgd Saccharomyces Genome Database ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$ 0 6600 0.0%
sibo Social Insect Behavior Ontology 2015-06-15 ^\d{7}$ 0 481 0.0%
so Sequence types and features ontology 2021-07-12 ^SO:\d{7}$ 0 2339 0.0%
spd Spider Ontology 2019-02-27 ^\d{7}$ 0 757 0.0%
swo Software ontology 1.7 ^\d{7}$ 0 13 0.0%
symp Symptom Ontology 2020-08-04 ^\d{7}$ 0 847 0.0%
tads Tick Anatomy Ontology 2015-08-20 ^\d{7}$ 0 628 0.0%
taxrank Taxonomic rank vocabulary 2016-04-15 ^\d{7}$ 0 61 0.0%
tgma Mosquito gross anatomy ontology 2013-06-03 ^\d{7}$ 0 1864 0.0%
trans Pathogen Transmission Ontology 2020-08-04 ^\d{7}$ 0 25 0.0%
uberon Uber Anatomy Ontology 2021-07-21 ^UBERON:\d+$ 0 14084 0.0%
umls Unified Medical Language System ^C\d+$ 0 4412440 0.0%
unimod Unimod protein modification database for mass spectrometry 2019-11-21 ^\d+$ 0 1500 0.0%
upa Unipathway 2018-12-12 ^(UCR|UCY|UER|ULS|UPA|UPC|UPX)\d{5}$ 0 4659 0.0%
vario Variation Ontology 2018-11-09 ^VariO:\d+$ 0 495 0.0%
wikipathways WikiPathways ID WP\d{1,5}(\_r\d+)?$ 0 1770 0.0%
xao Xenopus Anatomy Ontology 2021-03-04 ^\d{7}$ 0 1720 0.0%
xco Experimental condition ontology 2019-12-18 ^\d{7}$ 0 816 0.0%
xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary ^\d{5}$ 0 1101 0.0%
xpo Xenopus Phenotype Ontology 2021-03-05 ^\d+$ 0 20061 0.0%
zeco Zebrafish Experimental Conditions Ontology 2021-06-04 ^\d{7}$ 0 161 0.0%
zfa Zebrafish anatomy and development ontology 2020-03-18 ^\d{7}$ 0 3079 0.0%
zfs Zebrafish developmental stages ontology 2020-03-10 ^\d{7}$ 0 54 0.0%
zp Zebrafish Phenotype Ontology 2020-08-02 ^\d+$ 0 33725 0.0%
uniprot UniProt protein ID ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$ 1 565255 0.0%